Use Cases

We are extremely proud of the projects we have completed with various partners and clients.
A few representative examples are shown below. Perhaps one of these can serve as a starting point to discuss a new collaboration.

transmart

tranSMART Integration for the Exploration of Clinical Gene Expression

We have developed an elegant web-application for researchers to explore data sets with hundreds of patient gene expression profiles and related clinical parameters. The app provides a seamless integration with the tranSMART data repository, granting users the power to interrogate these data using our Real Time Interactive Visualization environment.

dicty

Hypothesis Testing and Exploratory Omics in Dictyostelium discoideum

Baylor College of Medicine, USA

dictyExpress is a data analytics web-app that facilitates exploration of RNA-, ChIP- and whole genome sequencing experiments in Dictyostelium. This configuration includes data management, automated analysis pipelines and custom real time interactive visualization modules.
www.dictyexpress.org

mouse

Real-Time Interactive Visualization Application For Mus musculus

Baylor College of Medicine, USA

We have developed an interactive, exploratory data analytics web-app that provides access to gene expression experiments in Mus musculus by Knockout Mouse Project. In progress are various custom data analysis pipelines that are required by the web-apps.
www.kompexpress.org

brain

Profiling Neurons One Cell at a Time

Baylor College of Medicine, USA

neuroExpress is an interactive data analytics web-app that facilitates exploration of single-neuron gene expression profiling. The various RTIV modules include in situ hybridization maps from Allen Brain Atlas.

gencover

Variant Reporting of Clinical WGS

Garvan Institute of Medical Research, Australia

genCover is a clinical web tool for variant visualization that produces an interactive output summarizing the coverage of genes, exons and variants from WGS of tumor/normal and other clinical samples. The nucleotide level coverage is displayed in an interactive genome browser showing multiple predictor tracks.

vaccine

Monitoring Vaccine Program Progress

Marie Skłodowska-Curie Research and Innovation Staff Exchange (RISE)

vaccineSurvey is an ongoing collaboration to develop and validate an innovative tool to monitor the progress of different vaccination programs and experimentally validate record-based coverage data.
https://www.vaccinesurveyproject.eu/